1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.54e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E5N70_RS15905
Response regulator OmpR family
Clostridioides difficile · GCF_005502205
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_005502205#E5N70_RS15905Stable P2CS identifier used across views.
GenomeGCF_005502205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:1.1e-27:232:78:77- Raw architecture: Response_reg:5:1.54e-36:114:111:111#Trans_reg_C:155:1.1e-27:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_005502205::NZ_SRMH01000014.1::G00045
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span39710-45433Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE5N70_15895RefSeq proteinWP_021408832.1
Context group ID
GCF_005502205::NZ_SRMH01000014.1::G00045Context members
E5N70_RS15900E5N70_RS15905E5N70_RS15910E5N70_RS15915E5N70_RS15920
Partner locus tags
E5N70_RS15900E5N70_RS15905E5N70_RS15910E5N70_RS15915E5N70_RS15920
Partner old locus tags
E5N70_15890E5N70_15895E5N70_15900E5N70_15905E5N70_15910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021408832.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE5N70_RS15905Primary locus identifier stored in the genes table.
Old locus tagE5N70_15895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SRMH01000014.1Sequence record reported by the local genomic context database.
Genomic interval40 861-41 559 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 710-45 433 ntGCF_005502205::NZ_SRMH01000014.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005502205::NZ_SRMH01000014.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SRMH01000014.1All displayed genes belong to this local TCS context.
Neighborhood span39 710-45 433 nt5 724 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 710 nt45 433 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
E5N70_RS15900GCF_005502205#E5N70_RS15900
HKClassic
39 710-40 825 nt · Reverse (-)
E5N70_RS15905GCF_005502205#E5N70_RS15905
RROmpRCurrent focus
40 861-41 559 nt · Reverse (-)
E5N70_RS15910GCF_005502205#E5N70_RS15910
RROmpR
41 939-42 619 nt · Reverse (-)
E5N70_RS15915GCF_005502205#E5N70_RS15915
HKClassic
42 669-44 684 nt · Reverse (-)
E5N70_RS15920GCF_005502205#E5N70_RS15920
RROmpR
44 756-45 433 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS16550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121689
Simplified PFAM architecture for RROC_1121689
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1121689
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS16550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_005502205
AssemblyASM550220v1 · Scaffoldhaploid
Genome composition4 221 572 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key