1 Response_reg#1
6-79 aa · 74 aa · 93.7% of protein
Raw token
Response_reg:6:8.07e-18:79:76:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FC701_RS29615
Response regulator, CheY family
Bacillus mycoides · GCF_005217805
ClassRRTypeCheYLength79 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005217805#FC701_RS29615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length79 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage74 / 79 aa (93.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa79 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:8.07e-18:79:76:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005217805::NZ_SZOD01000986.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span814-1050Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFC701_29610RefSeq proteinWP_137059209.1
Context group ID
GCF_005217805::NZ_SZOD01000986.1::G00011Context members
FC701_RS29615
Partner locus tags
FC701_RS29615
Partner old locus tags
FC701_29610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_137059209.1Primary protein accession used for annex mappings.
UniProt accessionA0A4U2ZYP9Primary UniProt accession resolved in the annex database.
UniProt IDA0A4U2ZYP9_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFC701_RS29615Primary locus identifier stored in the genes table.
Old locus tagFC701_29610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SZOD01000986.1Sequence record reported by the local genomic context database.
Genomic interval814-1 050 nt237 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span814-1 050 ntGCF_005217805::NZ_SZOD01000986.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005217805::NZ_SZOD01000986.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SZOD01000986.1All displayed genes belong to this local TCS context.
Neighborhood span814-1 050 nt237 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
814 nt1 050 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FC701_RS29615GCF_005217805#FC701_RS29615
RRCheYCurrent focus
814-1 050 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS13610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586794
Simplified PFAM architecture for RROC_1586794
PFAM domain coverage: 179 / 223 aa (80.3%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-112] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1586794
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS13610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_005217805
AssemblyASM521780v1 · Scaffoldhaploid
Genome composition6 602 848 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 61 · RR 56CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key