1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:3.93e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FC701_RS11170
Response regulator OmpR family
Bacillus mycoides · GCF_005217805
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005217805#FC701_RS11170Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 235 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 31.5% of protein
Raw token
Trans_reg_C:156:4.37e-35:229:74:77- Raw architecture: Response_reg:6:3.93e-39:115:111:111#Trans_reg_C:156:4.37e-35:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005217805::NZ_SZOD01000229.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span312-2858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFC701_11165RefSeq proteinWP_137057593.1
Context group ID
GCF_005217805::NZ_SZOD01000229.1::G00026Context members
FC701_RS11170FC701_RS11175
Partner locus tags
FC701_RS11170FC701_RS11175
Partner old locus tags
FC701_11165FC701_11170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_137057593.1Primary protein accession used for annex mappings.
UniProt accessionA0A4U3ABE5Primary UniProt accession resolved in the annex database.
UniProt IDA0A4U3ABE5_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFC701_RS11170Primary locus identifier stored in the genes table.
Old locus tagFC701_11165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SZOD01000229.1Sequence record reported by the local genomic context database.
Genomic interval312-1 019 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span312-2 858 ntGCF_005217805::NZ_SZOD01000229.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005217805::NZ_SZOD01000229.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SZOD01000229.1All displayed genes belong to this local TCS context.
Neighborhood span312-2 858 nt2 547 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
312 nt2 858 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FC701_RS11170GCF_005217805#FC701_RS11170
RROmpRCurrent focus
312-1 019 nt · Forward (+)
FC701_RS11175GCF_005217805#FC701_RS11175
HKClassic
1 023-2 858 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005217805#FC701_RS11170The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1026044
Simplified PFAM architecture for RROC_1026044
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1026044
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_005217805#FC701_RS11170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_005217805
AssemblyASM521780v1 · Scaffoldhaploid
Genome composition6 602 848 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 61 · RR 56CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key