1 HAMP#1
164-233 aa · 70 aa · 15.1% of protein
Raw token
HAMP:164:0.00000000000000244:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FC700_RS31965
Histidine kinase, Classic
Bacillus mycoides · GCF_005217685
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005217685#FC700_RS31965Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 464 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 14.2% of protein
Raw token
HisKA:258:0.0000000000000382:323:66:643 HATPase_c#3
369-460 aa · 92 aa · 19.8% of protein
Raw token
HATPase_c:369:3.98e-16:460:92:109- Raw architecture: HAMP:164:0.00000000000000244:233:70:69#HisKA:258:0.0000000000000382:323:66:64#HATPase_c:369:3.98e-16:460:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005217685::NZ_SZOC01000779.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span368-1761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFC700_31960RefSeq proteinWP_137077481.1
Context group ID
GCF_005217685::NZ_SZOC01000779.1::G00022Context members
FC700_RS31965
Partner locus tags
FC700_RS31965
Partner old locus tags
FC700_31960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_137077481.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFC700_RS31965Primary locus identifier stored in the genes table.
Old locus tagFC700_31960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SZOC01000779.1Sequence record reported by the local genomic context database.
Genomic interval368-1 761 nt1 394 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span368-1 761 ntGCF_005217685::NZ_SZOC01000779.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005217685::NZ_SZOC01000779.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SZOC01000779.1All displayed genes belong to this local TCS context.
Neighborhood span368-1 761 nt1 394 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
368 nt1 761 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FC700_RS31965GCF_005217685#FC700_RS31965
HKClassicCurrent focus
368-1 761 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS12015Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533638
Simplified PFAM architecture for HKOC_1533638
PFAM domain coverage: 226 / 490 aa (46.1%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-477]
- Domain count: 3
- Matched identifier: HKOC_1533638
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS12015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_005217685
AssemblyASM521768v1 · Scaffoldhaploid
Genome composition5 984 477 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 66 · RR 60CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key