1 Response_reg#1
6-86 aa · 81 aa · 94.2% of protein
Raw token
Response_reg:6:2.88e-20:86:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FC700_RS23655
Response regulator, CheY family
Bacillus mycoides · GCF_005217685
ClassRRTypeCheYLength86 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005217685#FC700_RS23655Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length86 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage81 / 86 aa (94.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa86 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:2.88e-20:86:83:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005217685::NZ_SZOC01000229.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFC700_23650RefSeq proteinWP_137076882.1
Context group ID
GCF_005217685::NZ_SZOC01000229.1::G00037Context members
FC700_RS23655
Partner locus tags
FC700_RS23655
Partner old locus tags
FC700_23650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_137076882.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFC700_RS23655Primary locus identifier stored in the genes table.
Old locus tagFC700_23650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SZOC01000229.1Sequence record reported by the local genomic context database.
Genomic interval1-259 nt259 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-259 ntGCF_005217685::NZ_SZOC01000229.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005217685::NZ_SZOC01000229.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SZOC01000229.1All displayed genes belong to this local TCS context.
Neighborhood span1-259 nt259 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt259 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FC700_RS23655GCF_005217685#FC700_RS23655
RRCheYCurrent focus
1-259 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS12120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588523
Simplified PFAM architecture for RROC_1588523
PFAM domain coverage: 179 / 223 aa (80.3%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-112] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1588523
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS12120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_005217685
AssemblyASM521768v1 · Scaffoldhaploid
Genome composition5 984 477 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 66 · RR 60CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key