1 Response_reg#1
6-108 aa · 103 aa · 52.0% of protein
Raw token
Response_reg:6:0.000000000000424:108:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FC700_RS20895
Response regulator NarL family
Bacillus mycoides · GCF_005217685
ClassRRTypeNarLLength198 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005217685#FC700_RS20895Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length198 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 198 aa (73.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa198 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-191 aa · 43 aa · 21.7% of protein
Raw token
HTH_LUXR:149:0.00000000123:191:43:58- Raw architecture: Response_reg:6:0.000000000000424:108:105:111#HTH_LUXR:149:0.00000000123:191:43:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005217685::NZ_SZOC01000178.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13490-14086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFC700_20890RefSeq proteinWP_137076697.1
Context group ID
GCF_005217685::NZ_SZOC01000178.1::G00023Context members
FC700_RS20895
Partner locus tags
FC700_RS20895
Partner old locus tags
FC700_20890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_137076697.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFC700_RS20895Primary locus identifier stored in the genes table.
Old locus tagFC700_20890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SZOC01000178.1Sequence record reported by the local genomic context database.
Genomic interval13 490-14 086 nt597 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 490-14 086 ntGCF_005217685::NZ_SZOC01000178.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005217685::NZ_SZOC01000178.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SZOC01000178.1All displayed genes belong to this local TCS context.
Neighborhood span13 490-14 086 nt597 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 490 nt14 086 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FC700_RS20895GCF_005217685#FC700_RS20895
RRNarLCurrent focus
13 490-14 086 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005217685#FC700_RS20895The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2150008
Simplified PFAM architecture for RROC_2150008
PFAM domain coverage: 149 / 198 aa (75.3%)
1 aa198 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-110] | GerE[148-191]
- Domain count: 2
- Matched identifier: RROC_2150008
- Positioned domains: Response_reg 6-110 ; Response_reg 6-110 ; GerE 148-191 ; GerE 148-191
Cluster members and taxonomy
Representative gene: GCF_005217685#FC700_RS20895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_005217685
AssemblyASM521768v1 · Scaffoldhaploid
Genome composition5 984 477 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 66 · RR 60CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key