1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000115:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EE567_RS07085
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_004919065
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004919065#EE567_RS07085Stable P2CS identifier used across views.
GenomeGCF_004919065Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000571:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000115:278:64:68#HATPase_c:325:0.0000000571:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004919065::NZ_CP054425.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1554819-1556824Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEE567_007085RefSeq proteinWP_032743676.1
Context group ID
GCF_004919065::NZ_CP054425.1::G00016Context members
EE567_RS07085EE567_RS07090
Partner locus tags
EE567_RS07085EE567_RS07090
Partner old locus tags
EE567_007085EE567_007090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032743676.1Primary protein accession used for annex mappings.
UniProt accessionA0A7D5BWE5Primary UniProt accession resolved in the annex database.
UniProt IDA0A7D5BWE5_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEE567_RS07085Primary locus identifier stored in the genes table.
Old locus tagEE567_007085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP054425.1Sequence record reported by the local genomic context database.
Genomic interval1 554 819-1 556 171 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 554 819-1 556 824 ntGCF_004919065::NZ_CP054425.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004919065::NZ_CP054425.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP054425.1All displayed genes belong to this local TCS context.
Neighborhood span1 554 819-1 556 824 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 554 819 nt1 556 824 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EE567_RS07085GCF_004919065#EE567_RS07085
HKClassicCurrent focus
1 554 819-1 556 171 nt · Forward (+)
EE567_RS07090GCF_004919065#EE567_RS07090
RRNarL
1 556 171-1 556 824 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730125#EK3BL_RS08955Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1962902
Simplified PFAM architecture for HKOC_1962902
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1962902
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_000730125#EK3BL_RS08955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_004919065
AssemblyASM491906v2 · Chromosomehaploid
Genome composition2 608 223 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 11 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key