1 HisKA#1
558-624 aa · 67 aa · 8.6% of protein
Raw token
HisKA:558:1.69e-18:624:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E5F28_RS08870
Histidine kinase, Classic
Clostridioides difficile · GCF_004684745
ClassHKTypeClassicLength778 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004684745#E5F28_RS08870Stable P2CS identifier used across views.
GenomeGCF_004684745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 778 aa (22.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa778 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
671-775 aa · 105 aa · 13.5% of protein
Raw token
HATPase_c:671:0.000000000364:775:110:109- Raw architecture: HisKA:558:1.69e-18:624:67:64#HATPase_c:671:0.000000000364:775:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004684745::NZ_SRKP01000055.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92653-95677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE5F28_08865RefSeq proteinWP_022618542.1
Context group ID
GCF_004684745::NZ_SRKP01000055.1::G00029Context members
E5F28_RS08865E5F28_RS08870
Partner locus tags
E5F28_RS08865E5F28_RS08870
Partner old locus tags
E5F28_08860E5F28_08865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022618542.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE5F28_RS08870Primary locus identifier stored in the genes table.
Old locus tagE5F28_08865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SRKP01000055.1Sequence record reported by the local genomic context database.
Genomic interval93 341-95 677 nt2 337 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 653-95 677 ntGCF_004684745::NZ_SRKP01000055.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004684745::NZ_SRKP01000055.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SRKP01000055.1All displayed genes belong to this local TCS context.
Neighborhood span92 653-95 677 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 653 nt95 677 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E5F28_RS08865GCF_004684745#E5F28_RS08865
RROmpR
92 653-93 369 nt · Forward (+)
E5F28_RS08870GCF_004684745#E5F28_RS08870
HKClassicCurrent focus
93 341-95 677 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0215275Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0598844
Simplified PFAM architecture for HKOC_0598844
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0598844
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0215275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004684745
AssemblyASM468474v1 · Contighaploid
Genome composition4 308 058 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key