1 Response_reg#1
5-114 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:5:4.41e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E5F34_RS08095
Response regulator OmpR family
Clostridioides difficile · GCF_004684645
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004684645#E5F34_RS08095Stable P2CS identifier used across views.
GenomeGCF_004684645Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:155:1.47e-34:229:75:77- Raw architecture: Response_reg:5:4.41e-35:114:111:111#Trans_reg_C:155:1.47e-34:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004684645::NZ_SRKK01000054.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span131140-132973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE5F34_08095RefSeq proteinWP_009889529.1
Context group ID
GCF_004684645::NZ_SRKK01000054.1::G00042Context members
E5F34_RS08090E5F34_RS08095
Partner locus tags
E5F34_RS08090E5F34_RS08095
Partner old locus tags
E5F34_08090E5F34_08095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009889529.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N262Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N262_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE5F34_RS08095Primary locus identifier stored in the genes table.
Old locus tagE5F34_08095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SRKK01000054.1Sequence record reported by the local genomic context database.
Genomic interval132 272-132 973 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span131 140-132 973 ntGCF_004684645::NZ_SRKK01000054.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004684645::NZ_SRKK01000054.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SRKK01000054.1All displayed genes belong to this local TCS context.
Neighborhood span131 140-132 973 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 140 nt132 973 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E5F34_RS08090GCF_004684645#E5F34_RS08090
HKClassic
131 140-132 222 nt · Reverse (-)
E5F34_RS08095GCF_004684645#E5F34_RS08095
RROmpRCurrent focus
132 272-132 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0208400Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080336
Simplified PFAM architecture for RROC_1080336
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1080336
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0208400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004684645
AssemblyASM468464v1 · Contighaploid
Genome composition4 042 406 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key