1 Response_reg#1
2-95 aa · 94 aa · 42.9% of protein
Raw token
Response_reg:2:1.27e-17:95:97:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E5F40_RS07030
Response regulator LytTR family
Clostridioides difficile · GCF_004684495
ClassRRTypeLytTRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004684495#E5F40_RS07030Stable P2CS identifier used across views.
GenomeGCF_004684495Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 219 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 LytTR#2
124-210 aa · 87 aa · 39.7% of protein
Raw token
LytTR:124:6.23e-19:210:93:98- Raw architecture: Response_reg:2:1.27e-17:95:97:111#LytTR:124:6.23e-19:210:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004684495::NZ_SRJZ01000092.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span67291-67951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE5F40_07030RefSeq proteinWP_232879427.1
Context group ID
GCF_004684495::NZ_SRJZ01000092.1::G00058Context members
E5F40_RS07030
Partner locus tags
E5F40_RS07030
Partner old locus tags
E5F40_07030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232879427.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE5F40_RS07030Primary locus identifier stored in the genes table.
Old locus tagE5F40_07030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SRJZ01000092.1Sequence record reported by the local genomic context database.
Genomic interval67 291-67 951 nt661 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 291-67 951 ntGCF_004684495::NZ_SRJZ01000092.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004684495::NZ_SRJZ01000092.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SRJZ01000092.1All displayed genes belong to this local TCS context.
Neighborhood span67 291-67 951 nt661 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 291 nt67 951 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E5F40_RS07030GCF_004684495#E5F40_RS07030
RRLytTRCurrent focus
67 291-67 951 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314285#E0N97_RS19255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0689876
Simplified PFAM architecture for RROC_0689876
PFAM domain coverage: 197 / 254 aa (77.6%)
1 aa254 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[24-134] | LytTR[159-244]
- Domain count: 2
- Matched identifier: RROC_0689876
- Positioned domains: Response_reg 24-134 ; Response_reg 24-134 ; LytTR 159-244 ; LytTR 159-244
Cluster members and taxonomy
Representative gene: GCF_004314285#E0N97_RS19255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004684495
AssemblyASM468449v1 · Contighaploid
Genome composition4 068 130 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key