1 Response_reg#1
11-123 aa · 113 aa · 50.7% of protein
Raw token
Response_reg:11:0.00000000000000227:123:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10002_RS10855
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_004334545
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004334545#MCC10002_RS10855Stable P2CS identifier used across views.
GenomeGCF_004334545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 223 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
161-216 aa · 56 aa · 25.1% of protein
Raw token
HTH_LUXR:161:0.00000000000123:216:56:58- Raw architecture: Response_reg:11:0.00000000000000227:123:114:111#HTH_LUXR:161:0.00000000000123:216:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004334545::NZ_SHPM01000035.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1168-1839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10002_2051RefSeq proteinWP_131309169.1
Context group ID
GCF_004334545::NZ_SHPM01000035.1::G00013Context members
MCC10002_RS10855
Partner locus tags
MCC10002_RS10855
Partner old locus tags
MCC10002_2051
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131309169.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10002_RS10855Primary locus identifier stored in the genes table.
Old locus tagMCC10002_2051Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHPM01000035.1Sequence record reported by the local genomic context database.
Genomic interval1 168-1 839 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 168-1 839 ntGCF_004334545::NZ_SHPM01000035.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334545::NZ_SHPM01000035.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHPM01000035.1All displayed genes belong to this local TCS context.
Neighborhood span1 168-1 839 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 168 nt1 839 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10002_RS10855GCF_004334545#MCC10002_RS10855
RRNarLCurrent focus
1 168-1 839 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004334545#MCC10002_RS10855The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1601924
Simplified PFAM architecture for RROC_1601924
PFAM domain coverage: 168 / 223 aa (75.3%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-122] | GerE[162-216]
- Domain count: 2
- Matched identifier: RROC_1601924
- Positioned domains: Response_reg 10-122 ; Response_reg 10-122 ; GerE 162-216 ; GerE 162-216
Cluster members and taxonomy
Representative gene: GCF_004334545#MCC10002_RS10855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334545
AssemblyASM433454v1 · Contighaploid
Genome composition2 634 509 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key