1 Response_reg#1
4-121 aa · 118 aa · 67.4% of protein
Raw token
Response_reg:4:4.59e-29:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10002_RS04885
Response regulator, CheY family
Bifidobacterium longum subsp. longum · GCF_004334545
ClassRRTypeCheYLength175 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004334545#MCC10002_RS04885Stable P2CS identifier used across views.
GenomeGCF_004334545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length175 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage118 / 175 aa (67.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa175 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:4.59e-29:121:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004334545::NZ_SHPM01000018.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-526Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004334545::NZ_SHPM01000018.1::G00007Context members
MCC10002_RS04885
Partner locus tags
MCC10002_RS04885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131308611.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10002_RS04885Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SHPM01000018.1Sequence record reported by the local genomic context database.
Genomic interval1-526 nt526 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-526 ntGCF_004334545::NZ_SHPM01000018.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334545::NZ_SHPM01000018.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHPM01000018.1All displayed genes belong to this local TCS context.
Neighborhood span1-526 nt526 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt526 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10002_RS04885GCF_004334545#MCC10002_RS04885
RRCheYCurrent focus
1-526 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004334545#MCC10002_RS04885The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2193751
Simplified PFAM architecture for RROC_2193751
PFAM domain coverage: 118 / 175 aa (67.4%)
1 aa175 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-121]
- Domain count: 1
- Matched identifier: RROC_2193751
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121
Cluster members and taxonomy
Representative gene: GCF_004334545#MCC10002_RS04885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334545
AssemblyASM433454v1 · Contighaploid
Genome composition2 634 509 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key