1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.0000000637:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10011_RS06140
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004334485
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004334485#MCC10011_RS06140Stable P2CS identifier used across views.
GenomeGCF_004334485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000304:392:86:109- Raw architecture: HisKA_3:201:0.0000000637:265:65:68#HATPase_c:322:0.0000304:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004334485::NZ_SHPU01000015.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span142034-144026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10011_1135RefSeq proteinWP_007056207.1
Context group ID
GCF_004334485::NZ_SHPU01000015.1::G00007Context members
MCC10011_RS06135MCC10011_RS06140
Partner locus tags
MCC10011_RS06135MCC10011_RS06140
Partner old locus tags
MCC10011_1134MCC10011_1135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007056207.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4NJF8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4NJF8_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10011_RS06140Primary locus identifier stored in the genes table.
Old locus tagMCC10011_1135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHPU01000015.1Sequence record reported by the local genomic context database.
Genomic interval142 794-144 026 nt1 233 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span142 034-144 026 ntGCF_004334485::NZ_SHPU01000015.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334485::NZ_SHPU01000015.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHPU01000015.1All displayed genes belong to this local TCS context.
Neighborhood span142 034-144 026 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 034 nt144 026 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10011_RS06135GCF_004334485#MCC10011_RS06135
RRNarL
142 034-142 759 nt · Reverse (-)
MCC10011_RS06140GCF_004334485#MCC10011_RS06140
HKClassicCurrent focus
142 794-144 026 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS01280Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2354149
Simplified PFAM architecture for HKOC_2354149
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2354149
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334485
AssemblyASM433448v1 · Contighaploid
Genome composition2 397 460 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key