1 Response_reg#1
18-119 aa · 102 aa · 50.7% of protein
Raw token
Response_reg:18:0.0000000000147:119:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10028_RS04480
Response regulator, unclassified
Bifidobacterium longum subsp. longum · GCF_004334425
ClassRRTypeunclassifiedLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004334425#MCC10028_RS04480Stable P2CS identifier used across views.
GenomeGCF_004334425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 201 aa (50.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa201 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:18:0.0000000000147:119:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004334425::NZ_SHQH01000011.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4795-5400Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10028_0837RefSeq proteinWP_131272402.1
Context group ID
GCF_004334425::NZ_SHQH01000011.1::G00007Context members
MCC10028_RS04480
Partner locus tags
MCC10028_RS04480
Partner old locus tags
MCC10028_0837
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131272402.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10028_RS04480Primary locus identifier stored in the genes table.
Old locus tagMCC10028_0837Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHQH01000011.1Sequence record reported by the local genomic context database.
Genomic interval4 795-5 400 nt606 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 795-5 400 ntGCF_004334425::NZ_SHQH01000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334425::NZ_SHQH01000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHQH01000011.1All displayed genes belong to this local TCS context.
Neighborhood span4 795-5 400 nt606 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 795 nt5 400 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10028_RS04480GCF_004334425#MCC10028_RS04480
RRunclassifiedCurrent focus
4 795-5 400 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004334425#MCC10028_RS04480The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2125303
Simplified PFAM architecture for RROC_2125303
PFAM domain coverage: 112 / 201 aa (55.7%)
1 aa201 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[18-129]
- Domain count: 1
- Matched identifier: RROC_2125303
- Positioned domains: Response_reg 18-129 ; Response_reg 18-129
Cluster members and taxonomy
Representative gene: GCF_004334425#MCC10028_RS04480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334425
AssemblyASM433442v1 · Contighaploid
Genome composition2 425 414 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key