1 Response_reg#1
22-134 aa · 113 aa · 48.3% of protein
Raw token
Response_reg:22:0.00000000000000189:134:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10030_RS09480
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_004334355
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004334355#MCC10030_RS09480Stable P2CS identifier used across views.
GenomeGCF_004334355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 234 aa (71.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
172-226 aa · 55 aa · 23.5% of protein
Raw token
HTH_LUXR:172:0.0000000000319:226:55:58- Raw architecture: Response_reg:22:0.00000000000000189:134:114:111#HTH_LUXR:172:0.0000000000319:226:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004334355::NZ_SHQJ01000039.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34764-35468Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10030_1803RefSeq proteinWP_242669917.1
Context group ID
GCF_004334355::NZ_SHQJ01000039.1::G00012Context members
MCC10030_RS09480
Partner locus tags
MCC10030_RS09480
Partner old locus tags
MCC10030_1803
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242669917.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R0SW16Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R0SW16_BIFLLDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10030_RS09480Primary locus identifier stored in the genes table.
Old locus tagMCC10030_1803Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHQJ01000039.1Sequence record reported by the local genomic context database.
Genomic interval34 764-35 468 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 764-35 468 ntGCF_004334355::NZ_SHQJ01000039.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334355::NZ_SHQJ01000039.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHQJ01000039.1All displayed genes belong to this local TCS context.
Neighborhood span34 764-35 468 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 764 nt35 468 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10030_RS09480GCF_004334355#MCC10030_RS09480
RRNarLCurrent focus
34 764-35 468 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004334355#MCC10030_RS09480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1056772
Simplified PFAM architecture for RROC_1056772
PFAM domain coverage: 166 / 234 aa (70.9%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[21-133] | GerE[173-225]
- Domain count: 2
- Matched identifier: RROC_1056772
- Positioned domains: Response_reg 21-133 ; Response_reg 21-133 ; GerE 173-225 ; GerE 173-225
Cluster members and taxonomy
Representative gene: GCF_004334355#MCC10030_RS09480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334355
AssemblyASM433435v1 · Contighaploid
Genome composition2 518 444 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key