1 Response_reg#1
3-65 aa · 63 aa · 96.9% of protein
Raw token
Response_reg:3:0.0000000000426:65:63:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10047_RS04015
Response regulator, CheY family
Bifidobacterium longum subsp. longum · GCF_004334325
ClassRRTypeCheYLength65 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004334325#MCC10047_RS04015Stable P2CS identifier used across views.
GenomeGCF_004334325Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length65 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage63 / 65 aa (96.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa65 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:0.0000000000426:65:63:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004334325::NZ_SHQY01000021.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1549Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004334325::NZ_SHQY01000021.1::G00006Context members
MCC10047_RS04015MCC10047_RS04020
Partner locus tags
MCC10047_RS04015MCC10047_RS04020
Partner old locus tags
MCC10047_0734
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131220826.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10047_RS04015Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SHQY01000021.1Sequence record reported by the local genomic context database.
Genomic interval1-197 nt197 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 549 ntGCF_004334325::NZ_SHQY01000021.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334325::NZ_SHQY01000021.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHQY01000021.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 549 nt1 549 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 549 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10047_RS04015GCF_004334325#MCC10047_RS04015
RRCheYCurrent focus
1-197 nt · Reverse (-)
MCC10047_RS04020GCF_004334325#MCC10047_RS04020
HKClassic
197-1 549 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS09160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847431
Simplified PFAM architecture for RROC_1847431
PFAM domain coverage: 158 / 217 aa (72.8%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1847431
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS09160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334325
AssemblyASM433432v1 · Contighaploid
Genome composition2 364 509 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 9 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key