1 Response_reg#1
1-70 aa · 70 aa · 36.6% of protein
Raw token
Response_reg:1:0.00000000000275:70:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10054_RS07740
Response regulator OmpR family
Bifidobacterium longum subsp. longum · GCF_004334245
ClassRRTypeOmpRLength191 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004334245#MCC10054_RS07740Stable P2CS identifier used across views.
GenomeGCF_004334245Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 191 aa (74.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
113-184 aa · 72 aa · 37.7% of protein
Raw token
Trans_reg_C:113:1.81e-20:184:75:77- Raw architecture: Response_reg:1:0.00000000000275:70:70:111#Trans_reg_C:113:1.81e-20:184:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004334245::NZ_SHRE01000037.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span93930-94505Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10054_1465RefSeq proteinWP_207392447.1
Context group ID
GCF_004334245::NZ_SHRE01000037.1::G00011Context members
MCC10054_RS07740
Partner locus tags
MCC10054_RS07740
Partner old locus tags
MCC10054_1465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207392447.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10054_RS07740Primary locus identifier stored in the genes table.
Old locus tagMCC10054_1465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHRE01000037.1Sequence record reported by the local genomic context database.
Genomic interval93 930-94 505 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 930-94 505 ntGCF_004334245::NZ_SHRE01000037.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334245::NZ_SHRE01000037.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRE01000037.1All displayed genes belong to this local TCS context.
Neighborhood span93 930-94 505 nt576 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 930 nt94 505 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10054_RS07740GCF_004334245#MCC10054_RS07740
RROmpRCurrent focus
93 930-94 505 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004334245#MCC10054_RS07740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2168610
Simplified PFAM architecture for RROC_2168610
PFAM domain coverage: 143 / 191 aa (74.9%)
1 aa191 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-73] | Trans_reg_C[114-184]
- Domain count: 2
- Matched identifier: RROC_2168610
- Positioned domains: Response_reg 2-73 ; Response_reg 2-73 ; Trans_reg_C 114-184 ; Trans_reg_C 114-184
Cluster members and taxonomy
Representative gene: GCF_004334245#MCC10054_RS07740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334245
AssemblyASM433424v1 · Contighaploid
Genome composition2 295 637 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key