1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.0000000594:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10054_RS06065
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004334245
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004334245#MCC10054_RS06065Stable P2CS identifier used across views.
GenomeGCF_004334245Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000296:392:86:109- Raw architecture: HisKA_3:201:0.0000000594:265:65:68#HATPase_c:322:0.0000296:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004334245::NZ_SHRE01000033.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32436-34428Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10054_1144RefSeq proteinWP_007057215.1
Context group ID
GCF_004334245::NZ_SHRE01000033.1::G00008Context members
MCC10054_RS06060MCC10054_RS06065
Partner locus tags
MCC10054_RS06060MCC10054_RS06065
Partner old locus tags
MCC10054_1143MCC10054_1144
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007057215.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3FGV5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3FGV5_BIFLLDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10054_RS06065Primary locus identifier stored in the genes table.
Old locus tagMCC10054_1144Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHRE01000033.1Sequence record reported by the local genomic context database.
Genomic interval33 196-34 428 nt1 233 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 436-34 428 ntGCF_004334245::NZ_SHRE01000033.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334245::NZ_SHRE01000033.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRE01000033.1All displayed genes belong to this local TCS context.
Neighborhood span32 436-34 428 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 436 nt34 428 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10054_RS06060GCF_004334245#MCC10054_RS06060
RRNarL
32 436-33 161 nt · Reverse (-)
MCC10054_RS06065GCF_004334245#MCC10054_RS06065
HKClassicCurrent focus
33 196-34 428 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000261205#HMPREF1315_RS00005Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2354315
Simplified PFAM architecture for HKOC_2354315
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2354315
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_000261205#HMPREF1315_RS00005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334245
AssemblyASM433424v1 · Contighaploid
Genome composition2 295 637 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key