1 HisKA_3#1
215-278 aa · 64 aa · 15.4% of protein
Raw token
HisKA_3:215:0.0000000000000537:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10054_RS04450
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004334245
ClassHKTypeClassicLength415 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004334245#MCC10054_RS04450Stable P2CS identifier used across views.
GenomeGCF_004334245Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length415 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 415 aa (35.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa415 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-407 aa · 83 aa · 20.0% of protein
Raw token
HATPase_c:325:0.000000632:407:83:109- Raw architecture: HisKA_3:215:0.0000000000000537:278:64:68#HATPase_c:325:0.000000632:407:83:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004334245::NZ_SHRE01000018.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span16973-18217Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004334245::NZ_SHRE01000018.1::G00007Context members
MCC10054_RS04450
Partner locus tags
MCC10054_RS04450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131298162.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10054_RS04450Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SHRE01000018.1Sequence record reported by the local genomic context database.
Genomic interval16 973-18 217 nt1 245 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 973-18 217 ntGCF_004334245::NZ_SHRE01000018.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334245::NZ_SHRE01000018.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRE01000018.1All displayed genes belong to this local TCS context.
Neighborhood span16 973-18 217 nt1 245 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 973 nt18 217 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10054_RS04450GCF_004334245#MCC10054_RS04450
HKClassicCurrent focus
16 973-18 217 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004334245#MCC10054_RS04450The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2312383
Simplified PFAM architecture for HKOC_2312383
PFAM domain coverage: 66 / 415 aa (15.9%)
1 aa415 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_2312383
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_004334245#MCC10054_RS04450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334245
AssemblyASM433424v1 · Contighaploid
Genome composition2 295 637 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key