1 HisKA#1
87-150 aa · 64 aa · 21.0% of protein
Raw token
HisKA:87:0.0000000587:150:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10008_RS04180
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004334035
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004334035#MCC10008_RS04180Stable P2CS identifier used across views.
GenomeGCF_004334035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 305 aa (56.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
197-304 aa · 108 aa · 35.4% of protein
Raw token
HATPase_c:197:3.5e-27:304:108:109- Raw architecture: HisKA:87:0.0000000587:150:64:64#HATPase_c:197:3.5e-27:304:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004334035::NZ_SHPR01000018.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86087-87705Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10008_0780RefSeq proteinWP_042741670.1
Context group ID
GCF_004334035::NZ_SHPR01000018.1::G00005Context members
MCC10008_RS04180MCC10008_RS04185
Partner locus tags
MCC10008_RS04180MCC10008_RS04185
Partner old locus tags
MCC10008_0780MCC10008_0781
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_042741670.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TGG0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TGG0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10008_RS04180Primary locus identifier stored in the genes table.
Old locus tagMCC10008_0780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHPR01000018.1Sequence record reported by the local genomic context database.
Genomic interval86 087-87 004 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 087-87 705 ntGCF_004334035::NZ_SHPR01000018.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004334035::NZ_SHPR01000018.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHPR01000018.1All displayed genes belong to this local TCS context.
Neighborhood span86 087-87 705 nt1 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 087 nt87 705 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10008_RS04180GCF_004334035#MCC10008_RS04180
HKClassicCurrent focus
86 087-87 004 nt · Reverse (-)
MCC10008_RS04185GCF_004334035#MCC10008_RS04185
RROmpR
87 007-87 705 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000828225#SE46_RS20695Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882151
Simplified PFAM architecture for HKOC_2882151
PFAM domain coverage: 171 / 305 aa (56.1%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-150] | HATPase_c[197-303]
- Domain count: 2
- Matched identifier: HKOC_2882151
- Positioned domains: HisKA 87-150 ; HATPase_c 197-303
Cluster members and taxonomy
Representative gene: GCF_000828225#SE46_RS20695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004334035
AssemblyASM433403v1 · Contighaploid
Genome composition2 543 674 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key