1 HisKA_3#1
244-302 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:244:0.00000000000000999:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10018_RS04225
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333905
ClassHKTypeClassicLength797 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333905#MCC10018_RS04225Stable P2CS identifier used across views.
GenomeGCF_004333905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length797 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 797 aa (28.1%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa797 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
345-438 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:345:0.000000000000221:438:110:1093 HisKA_3#3
694-764 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:694:0.000058:764:71:68- Raw architecture: HisKA_3:244:0.00000000000000999:302:59:68#HATPase_c:345:0.000000000000221:438:110:109#HisKA_3:694:0.000058:764:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333905::NZ_SHQA01000009.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96269-99636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10018_0794RefSeq proteinWP_131213097.1
Context group ID
GCF_004333905::NZ_SHQA01000009.1::G00006Context members
MCC10018_RS04225MCC10018_RS04230
Partner locus tags
MCC10018_RS04225MCC10018_RS04230
Partner old locus tags
MCC10018_0794MCC10018_0795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131213097.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10018_RS04225Primary locus identifier stored in the genes table.
Old locus tagMCC10018_0794Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHQA01000009.1Sequence record reported by the local genomic context database.
Genomic interval96 269-98 662 nt2 394 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 269-99 636 ntGCF_004333905::NZ_SHQA01000009.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333905::NZ_SHQA01000009.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHQA01000009.1All displayed genes belong to this local TCS context.
Neighborhood span96 269-99 636 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 269 nt99 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10018_RS04225GCF_004333905#MCC10018_RS04225
HKClassicCurrent focus
96 269-98 662 nt · Forward (+)
MCC10018_RS04230GCF_004333905#MCC10018_RS04230
RRNarL
98 746-99 636 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333905#MCC10018_RS04225The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0562188
Simplified PFAM architecture for HKOC_0562188
PFAM domain coverage: 412 / 797 aa (51.7%)
1 aa797 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-615]
- Domain count: 4
- Matched identifier: HKOC_0562188
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-615
Cluster members and taxonomy
Representative gene: GCF_004333905#MCC10018_RS04225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333905
AssemblyASM433390v1 · Contighaploid
Genome composition2 330 414 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key