1 Response_reg#1
7-80 aa · 74 aa · 28.2% of protein
Raw token
Response_reg:7:0.0000146:80:75:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10031_RS06060
Response regulator OmpR family
Bifidobacterium longum subsp. longum · GCF_004333785
ClassRRTypeOmpRLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004333785#MCC10031_RS06060Stable P2CS identifier used across views.
GenomeGCF_004333785Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 262 aa (55.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
190-261 aa · 72 aa · 27.5% of protein
Raw token
Trans_reg_C:190:0.0000148:261:77:77- Raw architecture: Response_reg:7:0.0000146:80:75:111#Trans_reg_C:190:0.0000148:261:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004333785::NZ_SHQK01000019.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span116364-117152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10031_1127RefSeq proteinWP_013140865.1
Context group ID
GCF_004333785::NZ_SHQK01000019.1::G00007Context members
MCC10031_RS06060
Partner locus tags
MCC10031_RS06060
Partner old locus tags
MCC10031_1127
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013140865.1Primary protein accession used for annex mappings.
UniProt accessionD6ZUR4Primary UniProt accession resolved in the annex database.
UniProt IDD6ZUR4_BIFLJDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10031_RS06060Primary locus identifier stored in the genes table.
Old locus tagMCC10031_1127Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHQK01000019.1Sequence record reported by the local genomic context database.
Genomic interval116 364-117 152 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 364-117 152 ntGCF_004333785::NZ_SHQK01000019.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333785::NZ_SHQK01000019.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHQK01000019.1All displayed genes belong to this local TCS context.
Neighborhood span116 364-117 152 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 364 nt117 152 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10031_RS06060GCF_004333785#MCC10031_RS06060
RROmpRCurrent focus
116 364-117 152 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS05900Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_0644116
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS05900
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 37 over 37 total members. Page 1 / 1.
GCF_000092325#BLJ_RS05900 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333785
AssemblyASM433378v1 · Contighaploid
Genome composition2 401 154 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 21 · HK 10 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key