1 Response_reg#1
24-125 aa · 102 aa · 49.3% of protein
Raw token
Response_reg:24:0.0000000000627:125:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10044_RS04695
Response regulator, unclassified
Bifidobacterium longum subsp. longum · GCF_004333645
ClassRRTypeunclassifiedLength207 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004333645#MCC10044_RS04695Stable P2CS identifier used across views.
GenomeGCF_004333645Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length207 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 207 aa (49.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa207 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:24:0.0000000000627:125:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004333645::NZ_SHQV01000012.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span89269-89892Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10044_0880RefSeq proteinWP_242667911.1
Context group ID
GCF_004333645::NZ_SHQV01000012.1::G00008Context members
MCC10044_RS04695
Partner locus tags
MCC10044_RS04695
Partner old locus tags
MCC10044_0880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242667911.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10044_RS04695Primary locus identifier stored in the genes table.
Old locus tagMCC10044_0880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHQV01000012.1Sequence record reported by the local genomic context database.
Genomic interval89 269-89 892 nt624 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span89 269-89 892 ntGCF_004333645::NZ_SHQV01000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333645::NZ_SHQV01000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHQV01000012.1All displayed genes belong to this local TCS context.
Neighborhood span89 269-89 892 nt624 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 269 nt89 892 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10044_RS04695GCF_004333645#MCC10044_RS04695
RRunclassifiedCurrent focus
89 269-89 892 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333735#MCC10036_RS06280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1855340
Simplified PFAM architecture for RROC_1855340
PFAM domain coverage: 112 / 217 aa (51.6%)
1 aa217 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[34-145]
- Domain count: 1
- Matched identifier: RROC_1855340
- Positioned domains: Response_reg 34-145 ; Response_reg 34-145
Cluster members and taxonomy
Representative gene: GCF_004333735#MCC10036_RS06280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333645
AssemblyASM433364v1 · Contighaploid
Genome composition2 512 809 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key