1 Response_reg#1
22-134 aa · 113 aa · 48.3% of protein
Raw token
Response_reg:22:0.00000000000000186:134:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10045_RS09610
Response regulator, unclassified
Bifidobacterium longum subsp. longum · GCF_004333625
ClassRRTypeunclassifiedLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004333625#MCC10045_RS09610Stable P2CS identifier used across views.
GenomeGCF_004333625Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 234 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 GerE#2
172-227 aa · 56 aa · 23.9% of protein
Raw token
GerE:172:0.0000000000803:227:56:57- Raw architecture: Response_reg:22:0.00000000000000186:134:114:111#GerE:172:0.0000000000803:227:56:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004333625::NZ_SHQW01000038.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span138318-139022Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10045_1817RefSeq proteinWP_242667971.1
Context group ID
GCF_004333625::NZ_SHQW01000038.1::G00012Context members
MCC10045_RS09610
Partner locus tags
MCC10045_RS09610
Partner old locus tags
MCC10045_1817
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242667971.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10045_RS09610Primary locus identifier stored in the genes table.
Old locus tagMCC10045_1817Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHQW01000038.1Sequence record reported by the local genomic context database.
Genomic interval138 318-139 022 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span138 318-139 022 ntGCF_004333625::NZ_SHQW01000038.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333625::NZ_SHQW01000038.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHQW01000038.1All displayed genes belong to this local TCS context.
Neighborhood span138 318-139 022 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 318 nt139 022 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10045_RS09610GCF_004333625#MCC10045_RS09610
RRunclassifiedCurrent focus
138 318-139 022 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333625#MCC10045_RS09610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1056767
Simplified PFAM architecture for RROC_1056767
PFAM domain coverage: 168 / 234 aa (71.8%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[21-133] | GerE[173-227]
- Domain count: 2
- Matched identifier: RROC_1056767
- Positioned domains: Response_reg 21-133 ; Response_reg 21-133 ; GerE 173-227 ; GerE 173-227
Cluster members and taxonomy
Representative gene: GCF_004333625#MCC10045_RS09610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333625
AssemblyASM433362v1 · Contighaploid
Genome composition2 437 781 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key