1 Response_reg#1
27-138 aa · 112 aa · 46.5% of protein
Raw token
Response_reg:27:6.47e-28:138:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10050_RS05775
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_004333555
ClassRRTypeNarLLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333555#MCC10050_RS05775Stable P2CS identifier used across views.
GenomeGCF_004333555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 241 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
176-232 aa · 57 aa · 23.7% of protein
Raw token
HTH_LUXR:176:3.79e-16:232:58:58- Raw architecture: Response_reg:27:6.47e-28:138:112:111#HTH_LUXR:176:3.79e-16:232:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333555::NZ_SHRA01000013.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60374-62366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10050_1076RefSeq proteinWP_131238790.1
Context group ID
GCF_004333555::NZ_SHRA01000013.1::G00009Context members
MCC10050_RS05770MCC10050_RS05775
Partner locus tags
MCC10050_RS05770MCC10050_RS05775
Partner old locus tags
MCC10050_1075MCC10050_1076
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131238790.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10050_RS05775Primary locus identifier stored in the genes table.
Old locus tagMCC10050_1076Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHRA01000013.1Sequence record reported by the local genomic context database.
Genomic interval61 641-62 366 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 374-62 366 ntGCF_004333555::NZ_SHRA01000013.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333555::NZ_SHRA01000013.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRA01000013.1All displayed genes belong to this local TCS context.
Neighborhood span60 374-62 366 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 374 nt62 366 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10050_RS05770GCF_004333555#MCC10050_RS05770
HKClassic
60 374-61 606 nt · Forward (+)
MCC10050_RS05775GCF_004333555#MCC10050_RS05775
RRNarLCurrent focus
61 641-62 366 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333555#MCC10050_RS05775The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0868495
Simplified PFAM architecture for RROC_0868495
PFAM domain coverage: 165 / 241 aa (68.5%)
1 aa241 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[25-138] | Sigma70_r4_2[170-220]
- Domain count: 2
- Matched identifier: RROC_0868495
- Positioned domains: Response_reg 25-138 ; Response_reg 25-138 ; Sigma70_r4_2 170-220 ; Sigma70_r4_2 170-220
Cluster members and taxonomy
Representative gene: GCF_004333555#MCC10050_RS05775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333555
AssemblyASM433355v1 · Contighaploid
Genome composition2 280 366 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key