1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:5.67e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10050_RS04060
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_004333555
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333555#MCC10050_RS04060Stable P2CS identifier used across views.
GenomeGCF_004333555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 248 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:5.3e-23:242:58:58- Raw architecture: Response_reg:9:5.67e-28:133:125:111#HTH_LUXR:185:5.3e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333555::NZ_SHRA01000008.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44246-47678Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10050_0748RefSeq proteinWP_131238648.1
Context group ID
GCF_004333555::NZ_SHRA01000008.1::G00005Context members
MCC10050_RS04060MCC10050_RS04065
Partner locus tags
MCC10050_RS04060MCC10050_RS04065
Partner old locus tags
MCC10050_0748MCC10050_0749
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131238648.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10050_RS04060Primary locus identifier stored in the genes table.
Old locus tagMCC10050_0748Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHRA01000008.1Sequence record reported by the local genomic context database.
Genomic interval44 246-44 992 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 246-47 678 ntGCF_004333555::NZ_SHRA01000008.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333555::NZ_SHRA01000008.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRA01000008.1All displayed genes belong to this local TCS context.
Neighborhood span44 246-47 678 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 246 nt47 678 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10050_RS04060GCF_004333555#MCC10050_RS04060
RRNarLCurrent focus
44 246-44 992 nt · Reverse (-)
MCC10050_RS04065GCF_004333555#MCC10050_RS04065
HKClassic
45 069-47 678 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333555#MCC10050_RS04060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0746758
Simplified PFAM architecture for RROC_0746758
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0746758
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_004333555#MCC10050_RS04060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333555
AssemblyASM433355v1 · Contighaploid
Genome composition2 280 366 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key