1 HisKA_3#1
235-298 aa · 64 aa · 13.6% of protein
Raw token
HisKA_3:235:0.0000000000000179:298:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10055_RS04060
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333455
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333455#MCC10055_RS04060Stable P2CS identifier used across views.
GenomeGCF_004333455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 470 aa (38.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
345-463 aa · 119 aa · 25.3% of protein
Raw token
HATPase_c:345:0.000000108:463:120:109- Raw architecture: HisKA_3:235:0.0000000000000179:298:64:68#HATPase_c:345:0.000000108:463:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333455::NZ_SHRF01000018.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79105-81170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10055_0758RefSeq proteinWP_131227723.1
Context group ID
GCF_004333455::NZ_SHRF01000018.1::G00006Context members
MCC10055_RS04055MCC10055_RS04060
Partner locus tags
MCC10055_RS04055MCC10055_RS04060
Partner old locus tags
MCC10055_0757MCC10055_0758
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131227723.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10055_RS04060Primary locus identifier stored in the genes table.
Old locus tagMCC10055_0758Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHRF01000018.1Sequence record reported by the local genomic context database.
Genomic interval79 758-81 170 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 105-81 170 ntGCF_004333455::NZ_SHRF01000018.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333455::NZ_SHRF01000018.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRF01000018.1All displayed genes belong to this local TCS context.
Neighborhood span79 105-81 170 nt2 066 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 105 nt81 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10055_RS04055GCF_004333455#MCC10055_RS04055
RRNarL
79 105-79 758 nt · Reverse (-)
MCC10055_RS04060GCF_004333455#MCC10055_RS04060
HKClassicCurrent focus
79 758-81 170 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333455#MCC10055_RS04060The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1719734
Simplified PFAM architecture for HKOC_1719734
PFAM domain coverage: 66 / 470 aa (14.0%)
1 aa470 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[235-300]
- Domain count: 1
- Matched identifier: HKOC_1719734
- Positioned domains: HisKA_3 235-300
Cluster members and taxonomy
Representative gene: GCF_004333455#MCC10055_RS04060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333455
AssemblyASM433345v1 · Contighaploid
Genome composition2 486 026 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 21 · HK 11 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key