1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:2.67e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10064_RS03110
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333425
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333425#MCC10064_RS03110Stable P2CS identifier used across views.
GenomeGCF_004333425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 869 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000131:439:104:109- Raw architecture: HisKA_3:242:2.67e-18:304:63:68#HATPase_c:353:0.000000000000131:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333425::NZ_SHRM01000012.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96585-100017Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10064_0567RefSeq proteinWP_013582514.1
Context group ID
GCF_004333425::NZ_SHRM01000012.1::G00003Context members
MCC10064_RS03110MCC10064_RS03115
Partner locus tags
MCC10064_RS03110MCC10064_RS03115
Partner old locus tags
MCC10064_0567MCC10064_0568
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013582514.1Primary protein accession used for annex mappings.
UniProt accessionA0AA45V5W0Primary UniProt accession resolved in the annex database.
UniProt IDA0AA45V5W0_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10064_RS03110Primary locus identifier stored in the genes table.
Old locus tagMCC10064_0567Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHRM01000012.1Sequence record reported by the local genomic context database.
Genomic interval96 585-99 194 nt2 610 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 585-100 017 ntGCF_004333425::NZ_SHRM01000012.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333425::NZ_SHRM01000012.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRM01000012.1All displayed genes belong to this local TCS context.
Neighborhood span96 585-100 017 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 585 nt100 017 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10064_RS03110GCF_004333425#MCC10064_RS03110
HKClassicCurrent focus
96 585-99 194 nt · Forward (+)
MCC10064_RS03115GCF_004333425#MCC10064_RS03115
RRNarL
99 271-100 017 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000196555#BLLJ_RS03570Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0459437
Simplified PFAM architecture for HKOC_0459437
PFAM domain coverage: 426 / 869 aa (49.0%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-690]
- Domain count: 4
- Matched identifier: HKOC_0459437
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-690
Cluster members and taxonomy
Representative gene: GCF_000196555#BLLJ_RS03570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333425
AssemblyASM433342v1 · Contighaploid
Genome composition2 265 777 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key