1 HisKA_3#1
244-302 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:244:4.87e-16:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10066_RS03935
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333385
ClassHKTypeClassicLength819 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333385#MCC10066_RS03935Stable P2CS identifier used across views.
GenomeGCF_004333385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length819 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 819 aa (27.1%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
345-436 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:345:0.00000000000108:436:108:1093 HisKA_3#3
695-765 aa · 71 aa · 8.7% of protein
Raw token
HisKA_3:695:0.0000111:765:71:68- Raw architecture: HisKA_3:244:4.87e-16:302:59:68#HATPase_c:345:0.00000000000108:436:108:109#HisKA_3:695:0.0000111:765:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333385::NZ_SHRN01000014.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21792-25163Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10066_0719RefSeq proteinWP_131226795.1
Context group ID
GCF_004333385::NZ_SHRN01000014.1::G00005Context members
MCC10066_RS03935MCC10066_RS03940
Partner locus tags
MCC10066_RS03935MCC10066_RS03940
Partner old locus tags
MCC10066_0719MCC10066_0720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131226795.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10066_RS03935Primary locus identifier stored in the genes table.
Old locus tagMCC10066_0719Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHRN01000014.1Sequence record reported by the local genomic context database.
Genomic interval21 792-24 251 nt2 460 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 792-25 163 ntGCF_004333385::NZ_SHRN01000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333385::NZ_SHRN01000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRN01000014.1All displayed genes belong to this local TCS context.
Neighborhood span21 792-25 163 nt3 372 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 792 nt25 163 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10066_RS03935GCF_004333385#MCC10066_RS03935
HKClassicCurrent focus
21 792-24 251 nt · Forward (+)
MCC10066_RS03940GCF_004333385#MCC10066_RS03940
RRNarL
24 273-25 163 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333385#MCC10066_RS03935The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0531018
Simplified PFAM architecture for HKOC_0531018
PFAM domain coverage: 411 / 819 aa (50.2%)
1 aa819 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-614]
- Domain count: 4
- Matched identifier: HKOC_0531018
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-614
Cluster members and taxonomy
Representative gene: GCF_004333385#MCC10066_RS03935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333385
AssemblyASM433338v1 · Contighaploid
Genome composition2 293 826 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key