1 HAMP#1
209-278 aa · 70 aa · 12.4% of protein
Raw token
HAMP:209:1.32e-16:278:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10079_RS08020
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333215
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333215#MCC10079_RS08020Stable P2CS identifier used across views.
GenomeGCF_004333215Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 565 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation3 items
2 HisKA#2
290-356 aa · 67 aa · 11.9% of protein
Raw token
HisKA:290:0.000000000000061:356:67:643 HATPase_c#3
403-513 aa · 111 aa · 19.6% of protein
Raw token
HATPase_c:403:4.71e-30:513:111:109- Raw architecture: HAMP:209:1.32e-16:278:70:69#HisKA:290:0.000000000000061:356:67:64#HATPase_c:403:4.71e-30:513:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333215::NZ_SHSA01000043.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span105630-108046Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10079_1505RefSeq proteinWP_131234081.1
Context group ID
GCF_004333215::NZ_SHSA01000043.1::G00012Context members
MCC10079_RS08015MCC10079_RS08020
Partner locus tags
MCC10079_RS08015MCC10079_RS08020
Partner old locus tags
MCC10079_1504MCC10079_1505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131234081.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10079_RS08020Primary locus identifier stored in the genes table.
Old locus tagMCC10079_1505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSA01000043.1Sequence record reported by the local genomic context database.
Genomic interval106 349-108 046 nt1 698 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span105 630-108 046 ntGCF_004333215::NZ_SHSA01000043.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333215::NZ_SHSA01000043.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSA01000043.1All displayed genes belong to this local TCS context.
Neighborhood span105 630-108 046 nt2 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 630 nt108 046 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10079_RS08015GCF_004333215#MCC10079_RS08015
RROmpR
105 630-106 352 nt · Forward (+)
MCC10079_RS08020GCF_004333215#MCC10079_RS08020
HKClassicCurrent focus
106 349-108 046 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333215#MCC10079_RS08020The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1235821
Simplified PFAM architecture for HKOC_1235821
PFAM domain coverage: 230 / 565 aa (40.7%)
1 aa565 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[226-278] | HisKA[290-356] | HATPase_c[403-512]
- Domain count: 3
- Matched identifier: HKOC_1235821
- Positioned domains: HAMP 226-278 ; HisKA 290-356 ; HATPase_c 403-512
Cluster members and taxonomy
Representative gene: GCF_004333215#MCC10079_RS08020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333215
AssemblyASM433321v1 · Contighaploid
Genome composition2 382 717 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key