1 Response_reg#1
41-127 aa · 87 aa · 38.2% of protein
Raw token
Response_reg:41:0.0000000000000912:127:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10079_RS05280
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_004333215
ClassRRTypeNarLLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004333215#MCC10079_RS05280Stable P2CS identifier used across views.
GenomeGCF_004333215Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 228 aa (63.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
165-221 aa · 57 aa · 25.0% of protein
Raw token
HTH_LUXR:165:0.00000000000000625:221:57:58- Raw architecture: Response_reg:41:0.0000000000000912:127:87:111#HTH_LUXR:165:0.00000000000000625:221:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004333215::NZ_SHSA01000032.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2088-2783Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10079_0978RefSeq proteinWP_003829410.1
Context group ID
GCF_004333215::NZ_SHSA01000032.1::G00008Context members
MCC10079_RS05280
Partner locus tags
MCC10079_RS05280
Partner old locus tags
MCC10079_0978
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829410.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S2VWI5Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S2VWI5_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10079_RS05280Primary locus identifier stored in the genes table.
Old locus tagMCC10079_0978Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSA01000032.1Sequence record reported by the local genomic context database.
Genomic interval2 088-2 783 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 088-2 783 ntGCF_004333215::NZ_SHSA01000032.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333215::NZ_SHSA01000032.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSA01000032.1All displayed genes belong to this local TCS context.
Neighborhood span2 088-2 783 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 088 nt2 783 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCC10079_RS05280GCF_004333215#MCC10079_RS05280
RRNarLCurrent focus
2 088-2 783 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015555065#I2E43_RS09055Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0813992
Simplified PFAM architecture for RROC_0813992
PFAM domain coverage: 166 / 244 aa (68.0%)
1 aa244 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[30-142] | GerE[183-235]
- Domain count: 2
- Matched identifier: RROC_0813992
- Positioned domains: Response_reg 30-142 ; GerE 183-235
Cluster members and taxonomy
Representative gene: GCF_015555065#I2E43_RS09055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333215
AssemblyASM433321v1 · Contighaploid
Genome composition2 382 717 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key