1 HisKA_3#1
247-305 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:247:0.00000000000000305:305:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10078_RS04285
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333205
ClassHKTypeClassicLength800 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333205#MCC10078_RS04285Stable P2CS identifier used across views.
GenomeGCF_004333205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length800 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 800 aa (28.0%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
348-441 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:348:0.000000000000222:441:110:1093 HisKA_3#3
697-767 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:697:0.0000305:767:71:68- Raw architecture: HisKA_3:247:0.00000000000000305:305:59:68#HATPase_c:348:0.000000000000222:441:110:109#HisKA_3:697:0.0000305:767:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333205::NZ_SHRZ01000020.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81862-85238Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10078_0783RefSeq proteinWP_242672365.1
Context group ID
GCF_004333205::NZ_SHRZ01000020.1::G00005Context members
MCC10078_RS04280MCC10078_RS04285
Partner locus tags
MCC10078_RS04280MCC10078_RS04285
Partner old locus tags
MCC10078_0782MCC10078_0783
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242672365.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10078_RS04285Primary locus identifier stored in the genes table.
Old locus tagMCC10078_0783Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHRZ01000020.1Sequence record reported by the local genomic context database.
Genomic interval82 836-85 238 nt2 403 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 862-85 238 ntGCF_004333205::NZ_SHRZ01000020.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333205::NZ_SHRZ01000020.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHRZ01000020.1All displayed genes belong to this local TCS context.
Neighborhood span81 862-85 238 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 862 nt85 238 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10078_RS04280GCF_004333205#MCC10078_RS04280
RRNarL
81 862-82 752 nt · Reverse (-)
MCC10078_RS04285GCF_004333205#MCC10078_RS04285
HKClassicCurrent focus
82 836-85 238 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333205#MCC10078_RS04285The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0556595
Simplified PFAM architecture for HKOC_0556595
PFAM domain coverage: 412 / 800 aa (51.5%)
1 aa800 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-141] | HisKA_3[247-308] | HATPase_c[348-440] | DUF7134[488-618]
- Domain count: 4
- Matched identifier: HKOC_0556595
- Positioned domains: DUF7134 16-141 ; HisKA_3 247-308 ; HATPase_c 348-440 ; DUF7134 488-618
Cluster members and taxonomy
Representative gene: GCF_004333205#MCC10078_RS04285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333205
AssemblyASM433320v1 · Contighaploid
Genome composition2 271 979 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key