1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.0000000000000149:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10080_RS08400
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333175
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333175#MCC10080_RS08400Stable P2CS identifier used across views.
GenomeGCF_004333175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 663 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa663 aa
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:5.33e-18:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.3% of protein
Raw token
HATPase_c:480:3.18e-21:627:148:109- Raw architecture: HAMP:267:0.0000000000000149:335:69:69#HisKA:347:5.33e-18:416:70:64#HATPase_c:480:3.18e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333175::NZ_SHSB01000029.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89477-92230Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10080_1606RefSeq proteinWP_165502591.1
Context group ID
GCF_004333175::NZ_SHSB01000029.1::G00010Context members
MCC10080_RS08395MCC10080_RS08400
Partner locus tags
MCC10080_RS08395MCC10080_RS08400
Partner old locus tags
MCC10080_1605MCC10080_1606
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165502591.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10080_RS08400Primary locus identifier stored in the genes table.
Old locus tagMCC10080_1606Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSB01000029.1Sequence record reported by the local genomic context database.
Genomic interval90 239-92 230 nt1 992 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 477-92 230 ntGCF_004333175::NZ_SHSB01000029.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333175::NZ_SHSB01000029.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSB01000029.1All displayed genes belong to this local TCS context.
Neighborhood span89 477-92 230 nt2 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 477 nt92 230 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10080_RS08395GCF_004333175#MCC10080_RS08395
RROmpR
89 477-90 208 nt · Forward (+)
MCC10080_RS08400GCF_004333175#MCC10080_RS08400
HKClassicCurrent focus
90 239-92 230 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333175#MCC10080_RS08400The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0865021
Simplified PFAM architecture for HKOC_0865021
PFAM domain coverage: 268 / 663 aa (40.4%)
1 aa663 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0865021
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_004333175#MCC10080_RS08400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333175
AssemblyASM433317v1 · Contighaploid
Genome composition2 528 934 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key