1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.00000000000000115:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10091_RS07160
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004333015
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004333015#MCC10091_RS07160Stable P2CS identifier used across views.
GenomeGCF_004333015Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 663 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:5.78e-18:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.3% of protein
Raw token
HATPase_c:480:3.62e-21:627:148:109- Raw architecture: HAMP:267:0.00000000000000115:335:69:69#HisKA:347:5.78e-18:416:70:64#HATPase_c:480:3.62e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004333015::NZ_SHSK01000024.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span194257-197010Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10091_1353RefSeq proteinWP_032737987.1
Context group ID
GCF_004333015::NZ_SHSK01000024.1::G00009Context members
MCC10091_RS07160MCC10091_RS07165
Partner locus tags
MCC10091_RS07160MCC10091_RS07165
Partner old locus tags
MCC10091_1353MCC10091_1354
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032737987.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R0VQD0Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R0VQD0_BIFLLDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10091_RS07160Primary locus identifier stored in the genes table.
Old locus tagMCC10091_1353Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSK01000024.1Sequence record reported by the local genomic context database.
Genomic interval194 257-196 248 nt1 992 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span194 257-197 010 ntGCF_004333015::NZ_SHSK01000024.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004333015::NZ_SHSK01000024.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSK01000024.1All displayed genes belong to this local TCS context.
Neighborhood span194 257-197 010 nt2 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
194 257 nt197 010 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10091_RS07160GCF_004333015#MCC10091_RS07160
HKClassicCurrent focus
194 257-196 248 nt · Reverse (-)
MCC10091_RS07165GCF_004333015#MCC10091_RS07165
RROmpR
196 279-197 010 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730045#BL72_RS00945Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0864384
Simplified PFAM architecture for HKOC_0864384
PFAM domain coverage: 268 / 663 aa (40.4%)
1 aa663 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0864384
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_000730045#BL72_RS00945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004333015
AssemblyASM433301v1 · Contighaploid
Genome composition2 394 210 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key