1 Response_reg#1
4-121 aa · 118 aa · 52.0% of protein
Raw token
Response_reg:4:4.01e-25:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10106_RS05820
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_004332735
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004332735#MCC10106_RS05820Stable P2CS identifier used across views.
GenomeGCF_004332735Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 227 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-216 aa · 57 aa · 25.1% of protein
Raw token
HTH_LUXR:160:0.00000000000103:216:57:58- Raw architecture: Response_reg:4:4.01e-25:121:118:111#HTH_LUXR:160:0.00000000000103:216:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004332735::NZ_SHSX01000028.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3170-5135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10106_1085RefSeq proteinWP_003829522.1
Context group ID
GCF_004332735::NZ_SHSX01000028.1::G00009Context members
MCC10106_RS05815MCC10106_RS05820
Partner locus tags
MCC10106_RS05815MCC10106_RS05820
Partner old locus tags
MCC10106_1084MCC10106_1085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829522.1Primary protein accession used for annex mappings.
UniProt accessionD4BPX3Primary UniProt accession resolved in the annex database.
UniProt IDD4BPX3_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10106_RS05820Primary locus identifier stored in the genes table.
Old locus tagMCC10106_1085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHSX01000028.1Sequence record reported by the local genomic context database.
Genomic interval4 452-5 135 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 170-5 135 ntGCF_004332735::NZ_SHSX01000028.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004332735::NZ_SHSX01000028.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHSX01000028.1All displayed genes belong to this local TCS context.
Neighborhood span3 170-5 135 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 170 nt5 135 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10106_RS05815GCF_004332735#MCC10106_RS05815
HKClassic
3 170-4 459 nt · Forward (+)
MCC10106_RS05820GCF_004332735#MCC10106_RS05820
RRNarLCurrent focus
4 452-5 135 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS04000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354555
Simplified PFAM architecture for RROC_1354555
PFAM domain coverage: 173 / 227 aa (76.2%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[161-215]
- Domain count: 2
- Matched identifier: RROC_1354555
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; GerE 161-215 ; GerE 161-215
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS04000
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 88 total members. Page 1 / 2.
GCF_000158015#BIFBRE_RS04000 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004332735
AssemblyASM433273v1 · Contighaploid
Genome composition2 415 027 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key