1 HAMP#1
253-321 aa · 69 aa · 10.6% of protein
Raw token
HAMP:253:0.00000000000000128:321:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10115_RS07810
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_004332645
ClassHKTypeClassicLength649 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004332645#MCC10115_RS07810Stable P2CS identifier used across views.
GenomeGCF_004332645Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length649 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 649 aa (44.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa649 aa
Domain-by-domain annotation3 items
2 HisKA#2
333-402 aa · 70 aa · 10.8% of protein
Raw token
HisKA:333:7.65e-18:402:70:643 HATPase_c#3
466-613 aa · 148 aa · 22.8% of protein
Raw token
HATPase_c:466:5.52e-21:613:148:109- Raw architecture: HAMP:253:0.00000000000000128:321:69:69#HisKA:333:7.65e-18:402:70:64#HATPase_c:466:5.52e-21:613:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004332645::NZ_SHTE01000031.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24915-27626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMCC10115_1489RefSeq proteinWP_165499206.1
Context group ID
GCF_004332645::NZ_SHTE01000031.1::G00010Context members
MCC10115_RS07810MCC10115_RS07815
Partner locus tags
MCC10115_RS07810MCC10115_RS07815
Partner old locus tags
MCC10115_1489MCC10115_1490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165499206.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10115_RS07810Primary locus identifier stored in the genes table.
Old locus tagMCC10115_1489Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SHTE01000031.1Sequence record reported by the local genomic context database.
Genomic interval24 915-26 864 nt1 950 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 915-27 626 ntGCF_004332645::NZ_SHTE01000031.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004332645::NZ_SHTE01000031.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SHTE01000031.1All displayed genes belong to this local TCS context.
Neighborhood span24 915-27 626 nt2 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 915 nt27 626 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MCC10115_RS07810GCF_004332645#MCC10115_RS07810
HKClassicCurrent focus
24 915-26 864 nt · Reverse (-)
MCC10115_RS07815GCF_004332645#MCC10115_RS07815
RROmpR
26 895-27 626 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004332645#MCC10115_RS07810The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0899600
Simplified PFAM architecture for HKOC_0899600
PFAM domain coverage: 268 / 649 aa (41.3%)
1 aa649 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[270-321] | HisKA[334-402] | HATPase_c[466-612]
- Domain count: 3
- Matched identifier: HKOC_0899600
- Positioned domains: HAMP 270-321 ; HisKA 334-402 ; HATPase_c 466-612
Cluster members and taxonomy
Representative gene: GCF_004332645#MCC10115_RS07810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004332645
AssemblyASM433264v1 · Contighaploid
Genome composition2 433 724 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 8 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key