1 HisKA_3#1
137-199 aa · 63 aa · 17.6% of protein
Raw token
HisKA_3:137:0.000000566:199:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCC10115_RS04800
Phosphotransfer protein
Bifidobacterium longum subsp. longum · GCF_004332645
ClassPPTypeHisKaLength357 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_004332645#MCC10115_RS04800Stable P2CS identifier used across views.
GenomeGCF_004332645Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 MCC10115_RS04800MIST4
Domain signature
Compact overview inferred from the domain field
HisKA_3
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage63 / 357 aa (17.6%)Merged over positioned domains only.
Domain description1 HisKA_3Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation1 item
- Raw architecture: HisKA_3:137:0.000000566:199:63:68
- Domain description: 1 HisKA_3
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCC10115_RS04800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_004332645
AssemblyASM433264v1 · Contighaploid
Genome composition2 433 724 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 8 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key