1 HisKA#1
37-101 aa · 65 aa · 26.6% of protein
Raw token
HisKA:37:0.00000159:101:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0R89_RS18325
Histidine kinase, Classic
Clostridioides difficile · GCF_004319805
ClassHKTypeClassicLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004319805#E0R89_RS18325Stable P2CS identifier used across views.
GenomeGCF_004319805Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 244 aa (58.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
147-224 aa · 78 aa · 32.0% of protein
Raw token
HATPase_c:147:0.00000328:224:90:109- Raw architecture: HisKA:37:0.00000159:101:65:64#HATPase_c:147:0.00000328:224:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004319805::NZ_BITJ01000150.1::G00056
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3366-4100Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004319805::NZ_BITJ01000150.1::G00056Context members
E0R89_RS18325
Partner locus tags
E0R89_RS18325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207307330.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0R89_RS18325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BITJ01000150.1Sequence record reported by the local genomic context database.
Genomic interval3 366-4 100 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 366-4 100 ntGCF_004319805::NZ_BITJ01000150.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004319805::NZ_BITJ01000150.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BITJ01000150.1All displayed genes belong to this local TCS context.
Neighborhood span3 366-4 100 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 366 nt4 100 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0R89_RS18325GCF_004319805#E0R89_RS18325
HKClassicCurrent focus
3 366-4 100 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243285#DBQ37_RS12670Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2081720
Simplified PFAM architecture for HKOC_2081720
PFAM domain coverage: 143 / 440 aa (32.5%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-297] | HATPase_c[343-421]
- Domain count: 2
- Matched identifier: HKOC_2081720
- Positioned domains: HisKA 234-297 ; HATPase_c 343-421
Cluster members and taxonomy
Representative gene: GCF_900243285#DBQ37_RS12670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004319805
AssemblyASM431980v1 · Scaffoldhaploid
Genome composition4 062 555 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 51 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key