1 Response_reg#1
5-61 aa · 57 aa · 93.4% of protein
Raw token
Response_reg:5:1.29e-17:61:57:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0R89_RS01840
Response regulator, CheY family
Clostridioides difficile · GCF_004319805
ClassRRTypeCheYLength61 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004319805#E0R89_RS01840Stable P2CS identifier used across views.
GenomeGCF_004319805Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length61 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage57 / 61 aa (93.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa61 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.29e-17:61:57:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004319805::NZ_BITJ01000005.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-182Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004319805::NZ_BITJ01000005.1::G00006Context members
E0R89_RS01840
Partner locus tags
E0R89_RS01840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131086136.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0R89_RS01840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BITJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval1-182 nt182 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-182 ntGCF_004319805::NZ_BITJ01000005.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004319805::NZ_BITJ01000005.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BITJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span1-182 nt182 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt182 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0R89_RS01840GCF_004319805#E0R89_RS01840
RRCheYCurrent focus
1-182 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0218370Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199619
Simplified PFAM architecture for RROC_1199619
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1199619
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0218370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004319805
AssemblyASM431980v1 · Scaffoldhaploid
Genome composition4 062 555 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 51 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key