1 Response_reg#1
4-62 aa · 59 aa · 95.2% of protein
Raw token
Response_reg:4:0.000000000000845:62:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0R46_RS18005
Response regulator, CheY family
Clostridioides difficile · GCF_004319385
ClassRRTypeCheYLength62 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004319385#E0R46_RS18005Stable P2CS identifier used across views.
GenomeGCF_004319385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length62 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage59 / 62 aa (95.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa62 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.000000000000845:62:59:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004319385::NZ_BIXU01000173.1::G00054
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-188Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004319385::NZ_BIXU01000173.1::G00054Context members
E0R46_RS18005
Partner locus tags
E0R46_RS18005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131068567.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0R46_RS18005Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIXU01000173.1Sequence record reported by the local genomic context database.
Genomic interval1-188 nt188 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-188 ntGCF_004319385::NZ_BIXU01000173.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004319385::NZ_BIXU01000173.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIXU01000173.1All displayed genes belong to this local TCS context.
Neighborhood span1-188 nt188 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt188 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0R46_RS18005GCF_004319385#E0R46_RS18005
RRCheYCurrent focus
1-188 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS02150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080371
Simplified PFAM architecture for RROC_1080371
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1080371
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS02150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004319385
AssemblyASM431938v1 · Scaffoldhaploid
Genome composition4 058 177 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key