1 Response_reg#1
3-111 aa · 109 aa · 52.4% of protein
Raw token
Response_reg:3:4.95e-35:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0R25_RS19725
Response regulator OmpR family
Clostridioides difficile · GCF_004318825
ClassRRTypeOmpRLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004318825#E0R25_RS19725Stable P2CS identifier used across views.
GenomeGCF_004318825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 208 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-208 aa · 63 aa · 30.3% of protein
Raw token
Trans_reg_C:146:2.8e-18:208:63:77- Raw architecture: Response_reg:3:4.95e-35:111:110:111#Trans_reg_C:146:2.8e-18:208:63:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004318825::NZ_BIWS01000341.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1113-1736Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004318825::NZ_BIWS01000341.1::G00058Context members
E0R25_RS19725
Partner locus tags
E0R25_RS19725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131039809.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0R25_RS19725Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIWS01000341.1Sequence record reported by the local genomic context database.
Genomic interval1 113-1 736 nt624 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 113-1 736 ntGCF_004318825::NZ_BIWS01000341.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004318825::NZ_BIWS01000341.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIWS01000341.1All displayed genes belong to this local TCS context.
Neighborhood span1 113-1 736 nt624 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 113 nt1 736 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0R25_RS19725GCF_004318825#E0R25_RS19725
RROmpRCurrent focus
1 113-1 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0208730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586787
Simplified PFAM architecture for RROC_1586787
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1586787
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0208730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004318825
AssemblyASM431882v1 · Scaffoldhaploid
Genome composition4 112 375 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 47CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key