1 HisKA_3#1
16-81 aa · 66 aa · 30.7% of protein
Raw token
HisKA_3:16:1.67e-20:81:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0R01_RS10945
Histidine kinase, Classic
Clostridioides difficile · GCF_004318605
ClassHKTypeClassicLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004318605#E0R01_RS10945Stable P2CS identifier used across views.
GenomeGCF_004318605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 215 aa (70.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
122-206 aa · 85 aa · 39.5% of protein
Raw token
HATPase_c:122:0.0000000000913:206:104:109- Raw architecture: HisKA_3:16:1.67e-20:81:67:68#HATPase_c:122:0.0000000000913:206:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004318605::NZ_BIWH01000108.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10664-11951Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004318605::NZ_BIWH01000108.1::G00023Context members
E0R01_RS10940E0R01_RS10945
Partner locus tags
E0R01_RS10940E0R01_RS10945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254216621.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0R01_RS10945Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIWH01000108.1Sequence record reported by the local genomic context database.
Genomic interval11 304-11 951 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 664-11 951 ntGCF_004318605::NZ_BIWH01000108.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004318605::NZ_BIWH01000108.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIWH01000108.1All displayed genes belong to this local TCS context.
Neighborhood span10 664-11 951 nt1 288 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 664 nt11 951 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0R01_RS10940GCF_004318605#E0R01_RS10940
RRNarL
10 664-11 311 nt · Reverse (-)
E0R01_RS10945GCF_004318605#E0R01_RS10945
HKClassicCurrent focus
11 304-11 951 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004318605#E0R01_RS10945The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2929988
Simplified PFAM architecture for HKOC_2929988
PFAM domain coverage: 150 / 215 aa (69.8%)
1 aa215 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[16-80] | HATPase_c[122-206]
- Domain count: 2
- Matched identifier: HKOC_2929988
- Positioned domains: HisKA_3 16-80 ; HATPase_c 122-206
Cluster members and taxonomy
Representative gene: GCF_004318605#E0R01_RS10945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004318605
AssemblyASM431860v1 · Scaffoldhaploid
Genome composition3 926 314 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 89 · HK 43 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key