1 HisKA_2#1
120-194 aa · 75 aa · 24.0% of protein
Raw token
HisKA_2:120:2.52e-16:194:76:76P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0R01_RS09610
Histidine kinase, Classic
Clostridioides difficile · GCF_004318605
ClassHKTypeClassicLength313 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004318605#E0R01_RS09610Stable P2CS identifier used across views.
GenomeGCF_004318605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_2HATPase_c
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 313 aa (55.3%)Merged over positioned domains only.
Domain description1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
214-311 aa · 98 aa · 31.3% of protein
Raw token
HATPase_c:214:0.0000000952:311:114:109- Raw architecture: HisKA_2:120:2.52e-16:194:76:76#HATPase_c:214:0.0000000952:311:114:109
- Domain description: 1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004318605::NZ_BIWH01000088.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-944Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004318605::NZ_BIWH01000088.1::G00020Context members
E0R01_RS09610
Partner locus tags
E0R01_RS09610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131043880.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0R01_RS09610Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIWH01000088.1Sequence record reported by the local genomic context database.
Genomic interval1-944 nt944 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-944 ntGCF_004318605::NZ_BIWH01000088.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004318605::NZ_BIWH01000088.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIWH01000088.1All displayed genes belong to this local TCS context.
Neighborhood span1-944 nt944 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt944 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0R01_RS09610GCF_004318605#E0R01_RS09610
HKClassicCurrent focus
1-944 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041537345#ACD536_RS00630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR + GAF_PdtaS + HisKA_2 + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0878348
Simplified PFAM architecture for HKOC_0878348
PFAM domain coverage: 466 / 658 aa (70.8%)
1 aa658 aa
Response_regANTARGAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: Response_reg + ANTAR + GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: Response_reg[5-115] | ANTAR[134-186] | GAF_PdtaS[195-330] | HisKA_2[465-536] | HATPase_c[562-655]
- Domain count: 5
- Matched identifier: HKOC_0878348
- Positioned domains: Response_reg 5-115 ; ANTAR 134-186 ; GAF_PdtaS 195-330 ; HisKA_2 465-536 ; HATPase_c 562-655
Cluster members and taxonomy
Representative gene: GCF_041537345#ACD536_RS00630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004318605
AssemblyASM431860v1 · Scaffoldhaploid
Genome composition3 926 314 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 89 · HK 43 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key