1 HAMP#1
1-66 aa · 66 aa · 22.5% of protein
Raw token
HAMP:1:0.000000000058:66:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0Q96_RS17595
Histidine kinase, Classic
Clostridioides difficile · GCF_004318565
ClassHKTypeClassicLength293 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004318565#E0Q96_RS17595Stable P2CS identifier used across views.
GenomeGCF_004318565Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length293 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 293 aa (72.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa293 aa
Domain-by-domain annotation3 items
2 HisKA#2
78-137 aa · 60 aa · 20.5% of protein
Raw token
HisKA:78:0.000000000266:137:61:643 HATPase_c#3
184-268 aa · 85 aa · 29.0% of protein
Raw token
HATPase_c:184:6.77e-16:268:88:109- Raw architecture: HAMP:1:0.000000000058:66:66:69#HisKA:78:0.000000000266:137:61:64#HATPase_c:184:6.77e-16:268:88:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004318565::NZ_BIWF01000042.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18614-19495Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004318565::NZ_BIWF01000042.1::G00017Context members
E0Q96_RS17595
Partner locus tags
E0Q96_RS17595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254190941.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0Q96_RS17595Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIWF01000042.1Sequence record reported by the local genomic context database.
Genomic interval18 614-19 495 nt882 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 614-19 495 ntGCF_004318565::NZ_BIWF01000042.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004318565::NZ_BIWF01000042.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIWF01000042.1All displayed genes belong to this local TCS context.
Neighborhood span18 614-19 495 nt882 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 614 nt19 495 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0Q96_RS17595GCF_004318565#E0Q96_RS17595
HKClassicCurrent focus
18 614-19 495 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1783726
Simplified PFAM architecture for HKOC_1783726
PFAM domain coverage: 195 / 464 aa (42.0%)
1 aa464 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-236] | HisKA[250-308] | HATPase_c[355-440]
- Domain count: 3
- Matched identifier: HKOC_1783726
- Positioned domains: HAMP 187-236 ; HisKA 250-308 ; HATPase_c 355-440
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004318565
AssemblyASM431856v1 · Scaffoldhaploid
Genome composition3 643 242 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 46 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key