1 HisKA#1
221-287 aa · 67 aa · 16.3% of protein
Raw token
HisKA:221:0.00000000000000598:287:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0Q96_RS17205
Histidine kinase, Classic
Clostridioides difficile · GCF_004318565
ClassHKTypeClassicLength411 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004318565#E0Q96_RS17205Stable P2CS identifier used across views.
GenomeGCF_004318565Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage139 / 411 aa (33.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
340-411 aa · 72 aa · 17.5% of protein
Raw token
HATPase_c:340:0.0000173:411:76:109- Raw architecture: HisKA:221:0.00000000000000598:287:67:64#HATPase_c:340:0.0000173:411:76:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004318565::NZ_BIWF01000414.1::G00055
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1234Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004318565::NZ_BIWF01000414.1::G00055Context members
E0Q96_RS17205
Partner locus tags
E0Q96_RS17205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131040902.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0Q96_RS17205Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIWF01000414.1Sequence record reported by the local genomic context database.
Genomic interval1-1 234 nt1 234 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 234 ntGCF_004318565::NZ_BIWF01000414.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004318565::NZ_BIWF01000414.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIWF01000414.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 234 nt1 234 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 234 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0Q96_RS17205GCF_004318565#E0Q96_RS17205
HKClassicCurrent focus
1-1 234 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004318565#E0Q96_RS17205The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2347120
Simplified PFAM architecture for HKOC_2347120
PFAM domain coverage: 110 / 411 aa (26.8%)
1 aa411 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[167-209] | HisKA[221-287]
- Domain count: 2
- Matched identifier: HKOC_2347120
- Positioned domains: HAMP 167-209 ; HisKA 221-287
Cluster members and taxonomy
Representative gene: GCF_004318565#E0Q96_RS17205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004318565
AssemblyASM431856v1 · Scaffoldhaploid
Genome composition3 643 242 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 46 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key