1 Response_reg#1
4-98 aa · 95 aa · 96.9% of protein
Raw token
Response_reg:4:4.29e-20:98:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0Q71_RS17900
Response regulator, CheY family
Clostridioides difficile · GCF_004317985
ClassRRTypeCheYLength98 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004317985#E0Q71_RS17900Stable P2CS identifier used across views.
GenomeGCF_004317985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length98 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage95 / 98 aa (96.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa98 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:4.29e-20:98:96:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004317985::NZ_BIVC01000201.1::G00056
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-296Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004317985::NZ_BIVC01000201.1::G00056Context members
E0Q71_RS17900
Partner locus tags
E0Q71_RS17900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131006528.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0Q71_RS17900Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIVC01000201.1Sequence record reported by the local genomic context database.
Genomic interval1-296 nt296 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-296 ntGCF_004317985::NZ_BIVC01000201.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004317985::NZ_BIVC01000201.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIVC01000201.1All displayed genes belong to this local TCS context.
Neighborhood span1-296 nt296 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt296 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0Q71_RS17900GCF_004317985#E0Q71_RS17900
RRCheYCurrent focus
1-296 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004313825#E0N86_RS10800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1025602
Simplified PFAM architecture for RROC_1025602
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1025602
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_004313825#E0N86_RS10800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004317985
AssemblyASM431798v1 · Scaffoldhaploid
Genome composition3 959 306 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key