1 Response_reg#1
4-100 aa · 97 aa · 83.6% of protein
Raw token
Response_reg:4:0.00000000000000529:100:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0Q65_RS04115
Response regulator, CheY family
Clostridioides difficile · GCF_004317945
ClassRRTypeCheYLength116 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004317945#E0Q65_RS04115Stable P2CS identifier used across views.
GenomeGCF_004317945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length116 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage97 / 116 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa116 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.00000000000000529:100:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004317945::NZ_BIVA01000013.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span18144-18494Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004317945::NZ_BIVA01000013.1::G00012Context members
E0Q65_RS04115
Partner locus tags
E0Q65_RS04115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131037168.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0Q65_RS04115Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIVA01000013.1Sequence record reported by the local genomic context database.
Genomic interval18 144-18 494 nt351 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 144-18 494 ntGCF_004317945::NZ_BIVA01000013.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004317945::NZ_BIVA01000013.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIVA01000013.1All displayed genes belong to this local TCS context.
Neighborhood span18 144-18 494 nt351 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 144 nt18 494 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0Q65_RS04115GCF_004317945#E0Q65_RS04115
RRCheYCurrent focus
18 144-18 494 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004317945#E0Q65_RS04115The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2463706
Simplified PFAM architecture for RROC_2463706
PFAM domain coverage: 98 / 116 aa (84.5%)
1 aa116 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-101]
- Domain count: 1
- Matched identifier: RROC_2463706
- Positioned domains: Response_reg 4-101 ; Response_reg 4-101
Cluster members and taxonomy
Representative gene: GCF_004317945#E0Q65_RS04115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004317945
AssemblyASM431794v1 · Scaffoldhaploid
Genome composition3 989 507 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key