1 HisKA#1
51-104 aa · 54 aa · 20.5% of protein
Raw token
HisKA:51:0.00000181:104:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0Q76_RS19935
Histidine kinase, Classic
Clostridioides difficile · GCF_004317865
ClassHKTypeClassicLength264 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004317865#E0Q76_RS19935Stable P2CS identifier used across views.
GenomeGCF_004317865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length264 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 264 aa (62.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa264 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
150-260 aa · 111 aa · 42.0% of protein
Raw token
HATPase_c:150:1.15e-20:260:111:109- Raw architecture: HisKA:51:0.00000181:104:60:64#HATPase_c:150:1.15e-20:260:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004317865::NZ_BIUW01000133.1::G00045
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-797Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004317865::NZ_BIUW01000133.1::G00045Context members
E0Q76_RS19935
Partner locus tags
E0Q76_RS19935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207305643.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0Q76_RS19935Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIUW01000133.1Sequence record reported by the local genomic context database.
Genomic interval1-797 nt797 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-797 ntGCF_004317865::NZ_BIUW01000133.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004317865::NZ_BIUW01000133.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIUW01000133.1All displayed genes belong to this local TCS context.
Neighborhood span1-797 nt797 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt797 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0Q76_RS19935GCF_004317865#E0Q76_RS19935
HKClassicCurrent focus
1-797 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004317865#E0Q76_RS19935The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2910955
Simplified PFAM architecture for HKOC_2910955
PFAM domain coverage: 110 / 264 aa (41.7%)
1 aa264 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[150-259]
- Domain count: 1
- Matched identifier: HKOC_2910955
- Positioned domains: HATPase_c 150-259
Cluster members and taxonomy
Representative gene: GCF_004317865#E0Q76_RS19935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004317865
AssemblyASM431786v1 · Scaffoldhaploid
Genome composition4 131 092 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key