1 HisKA#1
53-113 aa · 61 aa · 22.7% of protein
Raw token
HisKA:53:0.0000353:113:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0P98_RS18555
Histidine kinase, Classic
Clostridioides difficile · GCF_004316105
ClassHKTypeClassicLength269 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004316105#E0P98_RS18555Stable P2CS identifier used across views.
GenomeGCF_004316105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length269 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 269 aa (62.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa269 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
159-266 aa · 108 aa · 40.1% of protein
Raw token
HATPase_c:159:2.72e-26:266:108:109- Raw architecture: HisKA:53:0.0000353:113:63:64#HATPase_c:159:2.72e-26:266:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004316105::NZ_BIRM01000067.1::G00058
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-811Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_004316105::NZ_BIRM01000067.1::G00058Context members
E0P98_RS18555
Partner locus tags
E0P98_RS18555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131009192.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0P98_RS18555Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIRM01000067.1Sequence record reported by the local genomic context database.
Genomic interval1-811 nt811 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-811 ntGCF_004316105::NZ_BIRM01000067.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004316105::NZ_BIRM01000067.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIRM01000067.1All displayed genes belong to this local TCS context.
Neighborhood span1-811 nt811 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt811 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0P98_RS18555GCF_004316105#E0P98_RS18555
HKClassicCurrent focus
1-811 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004316105#E0P98_RS18555The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2908101
Simplified PFAM architecture for HKOC_2908101
PFAM domain coverage: 108 / 269 aa (40.1%)
1 aa269 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[159-266]
- Domain count: 1
- Matched identifier: HKOC_2908101
- Positioned domains: HATPase_c 159-266
Cluster members and taxonomy
Representative gene: GCF_004316105#E0P98_RS18555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004316105
AssemblyASM431610v1 · Scaffoldhaploid
Genome composition4 186 148 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key