1 Response_reg#1
5-114 aa · 110 aa · 55.8% of protein
Raw token
Response_reg:5:9.73e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0P72_RS18605
Response regulator OmpR family
Clostridioides difficile · GCF_004315745
ClassRRTypeOmpRLength197 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004315745#E0P72_RS18605Stable P2CS identifier used across views.
GenomeGCF_004315745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
External referencesMIST4 E0P72_RS18605MIST4
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length197 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 197 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa197 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-196 aa · 42 aa · 21.3% of protein
Raw token
Trans_reg_C:155:0.00000000000000296:196:42:77- Raw architecture: Response_reg:5:9.73e-34:114:111:111#Trans_reg_C:155:0.00000000000000296:196:42:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004315745::NZ_BIQU01000089.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81-1806Genomic interval covered by the local TCS group.
Context group ID
GCF_004315745::NZ_BIQU01000089.1::G00057Context members
E0P72_RS18600E0P72_RS18605
Partner locus tags
E0P72_RS18600E0P72_RS18605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0P72_RS18605Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BIQU01000089.1Sequence record reported by the local genomic context database.
Genomic interval1 228-1 806 nt579 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81-1 806 ntGCF_004315745::NZ_BIQU01000089.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004315745::NZ_BIQU01000089.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BIQU01000089.1All displayed genes belong to this local TCS context.
Neighborhood span81-1 806 nt1 726 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 nt1 806 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0P72_RS18600GCF_004315745#E0P72_RS18600
HKClassic
81-1 163 nt · Reverse (-)
E0P72_RS18605GCF_004315745#E0P72_RS18605
RROmpRCurrent focus
1 228-1 806 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004315745#E0P72_RS18605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2152922
Simplified PFAM architecture for RROC_2152922
PFAM domain coverage: 149 / 197 aa (75.6%)
1 aa197 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-194]
- Domain count: 2
- Matched identifier: RROC_2152922
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-194 ; Trans_reg_C 155-194
Cluster members and taxonomy
Representative gene: GCF_004315745#E0P72_RS18605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_004315745
AssemblyASM431574v1 · Scaffoldhaploid
Genome composition4 253 106 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key